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catRAPID

catRAPID is an algorithm to estimate the binding propensity of protein-RNA pairs. By combining secondary structure, hydrogen bonding and van der Waals contributions, catRAPID predicts protein-RNA associations with great accuracy.


The original catRAPID server is available here. Developments based on catRAPID algorithm are listed below.

catRAPID fragments
Division of polypeptide and nucleotide sequences into fragments followed by prediction of the individual interaction propensities

catRAPID strength
Computes the strength of a protein-RNA pair with respect to a reference set

catRAPID omics
Computes the interaction between a molecule (protein/transcript) and the reference set (transcriptome/nucleotide-binding proteome) of a model organism.

catRAPID express
catRAPID 'express' and catRAPID 'express' omics allow the identification of co-expressed protein and RNA pairs in human tissues.

catRAPID signature
Searches for RNA-binding regions in protein sequences

catRAPID interactions with large RNAs
Division of polypeptide and nucleotide sequences into fragments followed by prediction of the overall interaction propensity.

Please, have a look at the documentation, at the tutorial and at the FAQs before starting using catRAPID.

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