CROSS algorithms focus on predicting structural features of the RNA based on genome-wide experimental data. The main algorithm CROSS is a high-throughput approach and without length restriction.
- CROSS
- Computes the secondary structure propensity profile.
- CROSSalign
- Computes the similarity of RNA secondary structure
- CROSSalive
- Computes RNA secondary structure profile in vivo considering m6A and A-to-I effects.
Please check CROSS Documentation and Tutorial for a better understanding of CROSS suite.