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CROSS

CROSS algorithms focus on predicting structural features of the RNA based on genome-wide experimental data. The main algorithm CROSS is a high-throughput approach and without length restriction.

CROSS
Computes the secondary structure propensity profile.

CROSSalign
Computes the similarity of RNA secondary structure

CROSSalive
Computes RNA secondary structure profile in vivo considering the effects of m6A methylation.

Please check CROSS Documentation and Tutorial for a better understanding of CROSS suite.