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OmiXcore

OmiXcore

OmiXcore predicts protein interactions with large RNA and is trained on eCLIP data, with proteins of length 150-2500 aa and RNAs of length 500-20000 nt. OmiXcore allows the quantitative prediction of binding site location on >15.000 long intergenic non-coding RNAs (lincRNAs), facilitating experimental design and analysis.



 

Submission reference: 401532


Submission label (optional)



Protein sequence (FASTA format - length in the range 150-2500 aa)



Run against lincRNAs database or custom RNA sequences

Custom
lincRNA library


RNA sequences (FASTA format - length in the range 500-20000 nt)



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Submission status:



Sample data

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P16989 and NM_006312 (NCOR2) - a positive protein-RNA pair, validated by eCLIP assay.