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catRAPID omics v2.1

catRAPID omics v2.1

Interaction prediction module between protein(s) and the precompiled transcriptome of a model organism.



 

Submission reference: 908114


Submission label (optional)

Which part of the transcriptome would you like to interrogate?

protein-coding RNAs
long non-coding RNAs
small non-coding RNAs
circular RNAs


Which library would you like to analyze?

Caenorhabditis elegans
Danio rerio
Drosophila melanogaster
Homo sapiens
Mus musculus
Rattus norvegicus
Saccharomyces cerevisiae
Xenopus tropicalis


Which library would you like to analyze?

Homo sapiens
Mus musculus
Rattus norvegicus


Email address (optional, used for notification)

Upload a fasta file with your protein sequence(s) (FASTA format, maximum 10 sequences of at least 50 aa)


Submission status:

Send submission



Sample data

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Human RBPs (full-length) against the Human circular RNA precompiled library - 6 Human RBPs (FXR1, FXR2, FMR1, PTBP1, MBNL2, RBM15) against the Human circular transcriptome
EZH2 and its mRNA interactome - EZH2 protein (full-length) against the Human transcriptome [Zhao et al., 2010]
TADBP and its small non-coding RNA interactome - TADBP protein (nucleic-acid-binding domains) against the Human small non-coding transcriptome